PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G159100.1
Common NameB456_011G159100, LOC105778367
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 410aa    MW: 46456.3 Da    PI: 5.5826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G159100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.9e-12198249155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Gorai.011G159100.1 198 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 249
                         79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-13196253No hitNo description
PROSITE profilePS5088815.428197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16197263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9203254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.216335409IPR002912ACT domain
CDDcd048733.03E-4335399No hitNo description
SuperFamilySSF550211.32E-5335397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLFCYKLDFL QANFVGPDYS LDHHQHHHQH QQPRIGESCG DNNNGMVDYM LNNPQQHQHI  60
SSSSGFYTTP ASFDKLSFAD VMQFADFGPK LALNQTRIPE DETGIDPSGY FLRFPVLNDK  120
LEAESLMVPP SGIENVEELV EDKHGEDEAR VSDNAAVQLR FFGEDDVHNR NPIAPTDPAK  180
NKRKRPRTIK TSEEVESQRM THIAVERNRR KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG  240
AIEFVRELEQ LLQCLESQKR RRLYGEASRQ MGDTSMAAIQ QQQQQQQQPV FPPMSTLPND  300
QMKVMEYETG LREETAENKS CLADVEVKLL GFDAMIKILC RRRPGQLVKT IAALEDLQLN  360
ILHTNITTIE QTVLYSFNVK VTSESGFSAE DIASSVQQIF SFIHANSSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198209RMTHIAVERNRR
2258262KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457506.10.0PREDICTED: transcription factor FAMA isoform X1
SwissprotQ56YJ81e-151FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0D2T8T80.0A0A0D2T8T8_G
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-140bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]